Rhodanobacter sp. Root179

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Rhodanobacter

Description

Rhodanobacter sp. Root179 is a Gram-negative bacterium with a rod-shaped morphology. It is characterized by possessing a single replicon, indicating a streamlined genomic structure. The accession number for this strain is LMHR00000000.1, which provides a reference for its genetic information. The classification of Rhodanobacter sp. Root179 as Gram-negative suggests that it has a thin peptidoglycan layer surrounded by an outer membrane, a feature typical of this group of bacteria. This structural characteristic may influence its interactions with the environment and other microorganisms. An ecological insight into Rhodanobacter sp. Root179 can be drawn from its classification and traits. Gram-negative bacteria are often involved in various soil processes, including nutrient cycling and bioremediation. The single replicon may suggest a specific adaptation to its ecological niche, potentially allowing for efficient replication and resource use in its environment. As a member of the Rhodanobacter genus, it may play a role in the degradation of sulfur compounds, contributing to the sulfur cycle in soil ecosystems. In summary, Rhodanobacter sp. Root179 is a Gram-negative, rod-shaped bacterium with a single replicon, which may have significant implications for its ecological functions, particularly in nutrient cycling and biogeochemical processes in soil environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusRhodanobacter
SpeciesRhodanobacter sp. Root179
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodanobacter sp. Root179


Gene Summary

Adenine Count

655793 bp

Thymine Count

651430 bp

Guanine Count

1299271 bp

Cytosine Count

1299256 bp

Genome Length

3905750 bp

Protein-coding Genes

3353 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lps export abc transporter permease lptfASD82_00195Not AvailablePositive46101 - 4721640451.1
lps export abc transporter permease lptgASD82_00200P0ADC7Positive47213 - 4831339920.2
threonine aldolaseASD82_00205P58319Positive48650 - 4966936923.3
hypothetical proteinASD82_00210Not AvailablePositive50088 - 5096931884.6
hypothetical proteinASD82_00215Not AvailablePositive51109 - 5308568043.2
hypothetical proteinASD82_00220Not AvailablePositive53882 - 5417810915.8
hypothetical proteinASD82_00225Not AvailablePositive55085 - 5573225106.9
hypothetical proteinASD82_00230Not AvailablePositive55859 - 560988780.19
hypothetical proteinASD82_00235A0A0H3GGE2Negative56966 - 571997684.84
transposaseASD82_00240Not AvailablePositive57667 - 5838027042.3

Displaying genes 31 – 40 of 3400 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

237 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da

Displaying 1–10 of 237 metabolites

Health Effects

No health effects information available for this bacterium.