Pseudomonas sp. Root68

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. Root68 is characterized by having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in various environments. The organism is documented in the sequence database with the accession number LMHI00000000.1, which serves as a reference for further studies and comparisons within the genus Pseudomonas. The single replicon trait suggests that Pseudomonas sp. Root68 may possess unique regulatory mechanisms and metabolic pathways that could enhance its survival and functionality in its ecological niche. The Pseudomonas genus is known for its versatile metabolism and ability to thrive in diverse habitats, including soil, water, and plant-associated environments. Such adaptability is essential for ecological interactions, particularly in plant root systems, where these bacteria can play significant roles in nutrient cycling and plant health. Overall, the genomic characteristics of Pseudomonas sp. Root68, particularly its single replicon, highlight its potential for specialized functions in its habitat. Understanding these traits can provide insights into the ecological roles of Pseudomonas species in enhancing soil health and plant growth, which is vital for sustainable agriculture and ecosystem management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. Root68
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. Root68
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. Root68 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1259211 bp

Thymine Count

1241388 bp

Guanine Count

1860031 bp

Cytosine Count

1889472 bp

Genome Length

6250934 bp

Protein-coding Genes

5451 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipopolysaccharide transport periplasmic protein lptaASD91_20475P0ADV3Negative5802086 - 580263419703.6
lps export abc transporter periplasmic protein lptcASD91_20480Not AvailableNegative5802621 - 580319321646.8
phenylphosphate carboxylase subunit deltaASD91_20485Q8ZB47Negative5803201 - 580372518954.0
d-arabinose 5-phosphate isomeraseASD91_20490Q9HVW0Negative5803725 - 580469934413.1
abc transporter atp-binding proteinASD91_20495Not AvailablePositive5804975 - 580578429516.0
abc transporter permeaseASD91_20500P45030Positive5805784 - 580658128417.2
outer membrane lipid asymmetry maintenance protein mladASD91_20505P64605Positive5806581 - 580704816473.1
toluene tolerance proteinASD91_20510Q9Z3Z9Positive5807060 - 580771323768.3
anti-anti-sigma factorASD91_20515Not AvailablePositive5807710 - 580801510681.9
bola family transcriptional regulatorASD91_20520Q89AF0Positive5808130 - 58083698749.41

Displaying genes 5121 – 5130 of 5553 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

409 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da

Displaying 1–10 of 409 metabolites

Health Effects

No health effects information available for this bacterium.