Caulobacter sp. Root656

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Caulobacterales

Family

Caulobacteraceae

Genus

Caulobacter

Description

Caulobacter sp. Root656 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella. This motility feature allows the bacterium to navigate its environment, which is essential for its ecological interactions. The organism has a single replicon, indicating a streamlined genetic architecture that may facilitate efficient replication and adaptation in its habitat. The accession number for Caulobacter sp. Root656 is LMHD00000000.1, which serves as a reference point for genetic and genomic studies related to this strain. Its classification as a member of the Caulobacter genus suggests that it shares traits common to this group, such as a life cycle that includes a distinctive stalked stage and the ability to thrive in aquatic environments. The ecological significance of Caulobacter sp. Root656 may relate to its role in the nutrient cycling processes in freshwater ecosystems, where it likely contributes to the degradation of organic materials. Additionally, its motility could enhance its ability to colonize surfaces, influencing microbial community structures in its environment. This bacterium may also serve as a model organism for studying the behaviors and adaptations of similar aquatic microorganisms. Overall, the traits of Caulobacter sp. Root656 highlight its potential importance in both ecological dynamics and microbiological research.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderCaulobacterales
FamilyCaulobacteraceae
GenusCaulobacter
SpeciesCaulobacter sp. Root656
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Caulobacter sp. Root656
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Caulobacter sp. Root656


Gene Summary

Adenine Count

864094 bp

Thymine Count

860438 bp

Guanine Count

1879079 bp

Cytosine Count

1904864 bp

Genome Length

5515843 bp

Protein-coding Genes

4821 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinASD89_23420Not AvailableNegative4303976 - 43041737282.84
hypothetical proteinASD89_23425Not AvailableNegative4304170 - 43044639858.06
Gene transfer aget (gta) orfg9-like phage major tail proteinASD89_23430Not AvailableNegative4304606 - 430502214198.7
hypothetical proteinASD89_23435Not AvailableNegative4305175 - 430590325529.8
Major capsid proteinASD89_23440Not AvailableNegative4306029 - 430725543621.8
response regulatorASD89_00005Not AvailablePositive113 - 48112631.3
5s ribosomal rnaNot AvailableNot AvailablePositive2184 - 2298Not Available
hypothetical proteinASD89_00010A7ML93Negative651 - 3614106972.0
hypothetical proteinASD89_00015Not AvailablePositive4224 - 626374590.9
cytidine deaminaseASD89_00020Not AvailableNegative6339 - 678215172.9

Displaying genes 11 – 20 of 4882 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

355 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 355 metabolites

Health Effects

No health effects information available for this bacterium.