Rhodanobacter sp. Root627

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Rhodanobacter

Description

Rhodanobacter sp. Root627 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species possesses a single replicon, indicating a simplified genomic structure compared to other bacteria that may have multiple replicons. The strain is cataloged under the accession number LMGW00000000.1, which provides a reference point for its genetic information. As a member of the Rhodanobacter genus, Rhodanobacter sp. Root627 may play a significant role in various ecological niches, particularly in soil environments. Members of this genus are often associated with biogeochemical processes, including the degradation of organic matter and the cycling of nutrients. The specific traits of Rhodanobacter sp. Root627 suggest that it could contribute to the microbial diversity found in its habitat, potentially influencing soil health and fertility. Understanding the characteristics of Rhodanobacter sp. Root627 can provide insights into its ecological functions, especially in relation to its interactions with plants and other microorganisms. The presence of this bacterium in the soil ecosystem underscores the importance of microbial communities in maintaining soil quality and supporting plant growth. Further research into its metabolic capabilities and ecological roles could reveal more about how Rhodanobacter sp. Root627 contributes to soil health and nutrient dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusRhodanobacter
SpeciesRhodanobacter sp. Root627
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodanobacter sp. Root627


Gene Summary

Adenine Count

644781 bp

Thymine Count

634842 bp

Guanine Count

1203421 bp

Cytosine Count

1227713 bp

Genome Length

3710843 bp

Protein-coding Genes

3193 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinASD68_00210P64566Negative34652 - 3522721377.7
pyrroline-5-carboxylate reductaseASD68_00215P22008Negative35224 - 3604527611.4
type iv pili twitching motility protein piltASD68_00220P24559Positive36505 - 3754238459.4
type iv pili twitching motility protein piltASD68_00225Not AvailablePositive37697 - 3886943333.4
transporterASD68_00230Not AvailableNegative38966 - 3934012694.0
hypothetical proteinASD68_00235Not AvailableNegative39523 - 4027826681.2
hypothetical proteinASD68_00240Not AvailableNegative40383 - 4217062846.6
aspartate carbamoyltransferase catalytic subunitASD68_00245Q4UWY7Negative42285 - 4321133998.0
holliday junction resolvaseASD68_00250B2I5Y9Negative43238 - 4368416136.2
hypothetical proteinASD68_00255Q4UWY9Negative43681 - 4425020474.3

Displaying genes 41 – 50 of 3244 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

243 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da

Displaying 1–10 of 243 metabolites

Health Effects

No health effects information available for this bacterium.