Nocardioides sp. Root151

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Nocardioides

Description

Nocardioides sp. Root151 is characterized by having a single replicon, which indicates a streamlined genetic structure typical of many bacteria. Its genomic data is accessible under the accession number LMGG00000000.1, allowing for further exploration of its genetic and functional attributes. Nocardioides species are known for their ecological roles, particularly in soil environments, where they contribute to the degradation of organic matter and the cycling of nutrients. This genus is part of the Actinobacteria phylum and is recognized for its diverse metabolic capabilities, which can include the degradation of complex hydrocarbons and other organic compounds. The presence of Nocardioides sp. Root151 in a particular ecological niche may suggest its importance in soil health and ecosystem functioning. By participating in the breakdown of organic materials, it plays a role in nutrient recycling, which is essential for maintaining the fertility and productivity of soil ecosystems. Additionally, its single replicon structure may reflect an adaptation to specific environmental conditions, enabling efficient growth and survival. Overall, Nocardioides sp. Root151 exemplifies the significant ecological contributions of soil-dwelling actinobacteria, highlighting their role in promoting soil health through organic matter degradation and nutrient cycling.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusNocardioides
SpeciesNocardioides sp. Root151
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardioides sp. Root151 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

759033 bp

Thymine Count

754577 bp

Guanine Count

1732675 bp

Cytosine Count

1733916 bp

Genome Length

4984412 bp

Protein-coding Genes

4609 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glutamine amidotransferaseASD66_10735A1SJA2Positive2324210 - 232481522228.6
transcriptional regulatorASD66_10740A1SJA3Positive2324837 - 232561027334.1
hypothetical proteinASD66_10745Not AvailablePositive2325660 - 232674838526.2
holliday junction resolvaseASD66_10750A1SJA5Positive2326841 - 232736218003.0
atp-dependent dna helicase ruvaASD66_10755A1SJA6Positive2327376 - 232798120891.2
atp-dependent dna helicase ruvbASD66_10760A1SJA7Positive2327984 - 232904537815.4
hypothetical proteinASD66_10765Q68WF3Positive2329108 - 232950614157.5
adenine phosphoribosyltransferaseASD66_10770A1SJB1Positive2329510 - 233006119004.9
glyceraldehyde-3-phosphate dehydrogenaseASD66_10775Q02PG5Positive2330150 - 233152950432.3
gtp pyrophosphokinaseASD66_10780P52560Positive2331643 - 233387483106.9

Displaying genes 2181 – 2190 of 4658 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

372 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 372 metabolites

Health Effects

No health effects information available for this bacterium.