Microbacterium sp. Root553

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Microbacterium

Description

Microbacterium sp. Root553 is characterized as a rod-shaped bacterium, which is a common morphological trait within the Microbacterium genus. This organism possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The genomic data for Microbacterium sp. Root553 is cataloged under the accession number LMFY00000000.1, which provides a reference for researchers interested in studying its genetic makeup and potential applications. Microbacterium species are typically known for their roles in soil and plant-associated ecosystems, where they often contribute to nutrient cycling and plant health. This specific strain, Root553, may play a role in the rhizosphere, the zone of soil influenced by plant roots, where interactions between microbes and plants are critical for nutrient uptake and soil fertility. The ecological insight from the traits of Microbacterium sp. Root553 suggests that its rod shape and single replicon might influence its survival and functional capabilities in the soil environment. The streamlined genomic architecture can facilitate efficient replication and adaptation to environmental stressors, which is vital for maintaining soil health and supporting plant growth. Understanding the characteristics of Microbacterium sp. Root553 could provide valuable insights into its ecological functions and potential applications in agriculture or bioremediation efforts.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusMicrobacterium
SpeciesMicrobacterium sp. Root553
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbacterium sp. Root553 contig_4, whole genome shotgun

Gene Summary

Adenine Count

552137 bp

Thymine Count

551672 bp

Guanine Count

1221652 bp

Cytosine Count

1218589 bp

Genome Length

3544260 bp

Protein-coding Genes

3252 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l14ASD43_14635C5CC52Positive3104625 - 310499313276.3
50s ribosomal protein l24ASD43_14640Q6AD06Positive3104997 - 310535612990.7
50s ribosomal protein l5ASD43_14645A9WSU5Positive3105356 - 310594621644.9
30s ribosomal protein s8ASD43_14650Q6AD08Positive3106068 - 310646614270.2
50s ribosomal protein l6ASD43_14655Q6AD09Positive3106473 - 310700918920.9
50s ribosomal protein l18ASD43_14660Q6AD10Positive3107012 - 310737112732.3
30s ribosomal protein s5ASD43_14665Q6AD11Positive3107368 - 310808424770.4
50s ribosomal protein l30ASD43_14670Q6AD12Positive3108084 - 31082696865.29
50s ribosomal protein l15ASD43_14675Q6AD13Positive3108467 - 310889515033.4
preprotein translocase subunit secyASD43_14680Q59912Positive3108998 - 311032048133.6

Displaying genes 2871 – 2880 of 3303 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

238 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 238 metabolites

Health Effects

No health effects information available for this bacterium.