Microbacterium sp. Root53

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Microbacterium

Description

Microbacterium sp. Root53 is a rod-shaped bacterium characterized by its singular replicon, indicating a simpler genomic structure compared to organisms with multiple replicons. This trait may suggest a streamlined genetic framework that could influence its adaptability and survival in various environments. The bacterium is cataloged under the accession number LMFR00000000.1, which provides a reference for its genetic sequence and potential functional studies. Microbacterium species are often found in diverse habitats, including soil and plant-associated environments, suggesting a role in nutrient cycling and plant health. The rod shape of Microbacterium sp. Root53 may confer advantages in colonization and biofilm formation, which are important for survival in competitive microbial communities. Understanding the specific ecological role of Microbacterium sp. Root53 may provide insights into its interactions with other microorganisms and its potential applications in agriculture or bioremediation. In summary, Microbacterium sp. Root53 exhibits a simple rod shape and a single replicon, characteristics that may influence its ecological interactions and functional roles in the environments it inhabits. Further studies on this bacterium could enhance our understanding of its biological significance and potential applications in ecosystem management.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusMicrobacterium
SpeciesMicrobacterium sp. Root53
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbacterium sp. Root53 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

411124 bp

Thymine Count

407297 bp

Guanine Count

1045798 bp

Cytosine Count

1046633 bp

Genome Length

2910897 bp

Protein-coding Genes

2610 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
preprotein translocase subunit secdASD19_10625Q53955Negative445392 - 44712861080.8
hypothetical proteinASD19_10630Not AvailableNegative447175 - 44759415251.1
atp-dependent dna helicase ruvbASD19_10635A5CS06Negative447683 - 44872037378.1
atp-dependent dna helicase ruvaASD19_10640Q6AFB5Negative448713 - 44933020644.9
holliday junction resolvaseASD19_10645Q6AFB6Negative449358 - 44994220241.3
hypothetical proteinASD19_10650Not AvailableNegative450091 - 45081326385.1
transcriptional regulatorASD19_10655Q6AFB7Negative450973 - 45173427045.8
pyridoxamine kinaseASD19_10660Q6AFC1Positive451842 - 45269330115.7
glutamine amidotransferaseASD19_10665A5CS10Negative452762 - 45335220671.9
pyridoxal biosynthesis lyase pdxsASD19_10670Q6AFB9Negative453355 - 45426031659.1

Displaying genes 411 – 420 of 2662 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

231 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000333(1R,4R)-bornane-2,5-dioneC10H14O2Chemical structure of (1R,4R)-bornane-2,5-dioneNot available
Average166.22Da
Monoisotopic166.0993797Da
BASm0000338(1R,4R,5R)-5-hydroxycamphorC10H16O2Chemical structure of (1R,4R,5R)-5-hydroxycamphorNot available
Average168.2328Da
Monoisotopic168.115029756Da
BASm0000368(1S,2R)-3-methylcyclohexa-3,5-diene-1,2-diolC7H10O2Chemical structure of (1S,2R)-3-methylcyclohexa-3,5-diene-1,2-diolNot available
Average126.155Da
Monoisotopic126.068079562Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 231 metabolites

Health Effects

No health effects information available for this bacterium.