Microbacterium sp. Root53

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Microbacterium

Description

Microbacterium sp. Root53 is a rod-shaped bacterium characterized by its singular replicon, indicating a simpler genomic structure compared to organisms with multiple replicons. This trait may suggest a streamlined genetic framework that could influence its adaptability and survival in various environments. The bacterium is cataloged under the accession number LMFR00000000.1, which provides a reference for its genetic sequence and potential functional studies. Microbacterium species are often found in diverse habitats, including soil and plant-associated environments, suggesting a role in nutrient cycling and plant health. The rod shape of Microbacterium sp. Root53 may confer advantages in colonization and biofilm formation, which are important for survival in competitive microbial communities. Understanding the specific ecological role of Microbacterium sp. Root53 may provide insights into its interactions with other microorganisms and its potential applications in agriculture or bioremediation. In summary, Microbacterium sp. Root53 exhibits a simple rod shape and a single replicon, characteristics that may influence its ecological interactions and functional roles in the environments it inhabits. Further studies on this bacterium could enhance our understanding of its biological significance and potential applications in ecosystem management.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusMicrobacterium
SpeciesMicrobacterium sp. Root53
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbacterium sp. Root53 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

411124 bp

Thymine Count

407297 bp

Guanine Count

1045798 bp

Cytosine Count

1046633 bp

Genome Length

2910897 bp

Protein-coding Genes

2610 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-isopropylmalate dehydrogenaseASD19_06425Q6AEP6Positive2068052 - 206910436897.7
branched-chain amino acid aminotransferaseASD19_06430A0R066Positive2069137 - 207025240374.9
2-hydroxyhepta-2,4-diene-1,7-dioate isomeraseASD19_06435I6Y276Positive2070275 - 207104827754.1
glutamate--trna ligaseASD19_06445Q6AEQ1Positive2072365 - 207387955671.1
Trna-glnNot AvailableNot AvailablePositive2073969 - 2074040Not Available
excisionaseASD19_06455Not AvailablePositive2074237 - 20744377631.1
integraseASD19_06460Not AvailablePositive2074430 - 207563543456.6
hypothetical proteinASD19_06465Not AvailablePositive2075778 - 207607711549.5
hypothetical proteinASD19_06470Not AvailablePositive2076108 - 20762966823.12
diaminopimelate decarboxylaseASD19_06475O53468Positive2076591 - 207694113243.0

Displaying genes 1911 – 1920 of 2662 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

231 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000333(1R,4R)-bornane-2,5-dioneC10H14O2Chemical structure of (1R,4R)-bornane-2,5-dioneNot available
Average166.22Da
Monoisotopic166.0993797Da
BASm0000338(1R,4R,5R)-5-hydroxycamphorC10H16O2Chemical structure of (1R,4R,5R)-5-hydroxycamphorNot available
Average168.2328Da
Monoisotopic168.115029756Da
BASm0000368(1S,2R)-3-methylcyclohexa-3,5-diene-1,2-diolC7H10O2Chemical structure of (1S,2R)-3-methylcyclohexa-3,5-diene-1,2-diolNot available
Average126.155Da
Monoisotopic126.068079562Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 231 metabolites

Health Effects

No health effects information available for this bacterium.