Lysobacter sp. Root494

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Lysobacter

Description

Lysobacter sp. Root494 is a Gram-negative, rod-shaped bacterium characterized by a single replicon. This organism is part of the genus Lysobacter, which is known for its diverse metabolic capabilities and roles in various ecological niches. The accession number for Lysobacter sp. Root494 is LMFH00000000.1, which provides a reference point for genomic and taxonomic studies. The unique traits of this bacterium suggest it may have specific adaptations that allow it to thrive in its environment, potentially influencing soil health and plant interactions. In ecological contexts, members of the Lysobacter genus are often noted for their capacity to degrade complex organic materials and contribute to nutrient cycling. Their presence in soil ecosystems can be significant, as they may promote plant growth and health through various mechanisms, including the suppression of plant pathogens. Understanding the specific characteristics and behaviors of Lysobacter sp. Root494 can provide insights into its potential applications in agriculture and environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusLysobacter
SpeciesLysobacter sp. Root494
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Lysobacter sp. Root494
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysobacter sp. Root494 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

596794 bp

Thymine Count

598383 bp

Guanine Count

1128070 bp

Cytosine Count

1118026 bp

Genome Length

3441323 bp

Protein-coding Genes

3007 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
30s ribosomal protein s5ASD14_15355P66586Negative3409764 - 341024917013.8
50s ribosomal protein l18ASD14_15360Q8PNR1Negative3410530 - 341088612608.2
50s ribosomal protein l6ASD14_15365Q8PNR2Negative3410916 - 341144318478.6
30s ribosomal protein s8ASD14_15370Q8PNR3Negative3411459 - 341185414172.5
30s ribosomal protein s14ASD14_15375Q3BWX0Negative3411977 - 341228211547.2
50s ribosomal protein l5ASD14_15380Q8PNR4Negative3412304 - 341284620246.7
50s ribosomal protein l24ASD14_15385B2FQJ5Negative3412848 - 341315611080.6
50s ribosomal protein l14ASD14_15390Q8NL02Negative3413171 - 341353913444.7
30s ribosomal protein s17ASD14_15395B4SKX2Negative3413555 - 341382410071.1
50s ribosomal protein l29ASD14_15400B4SKX1Negative3413837 - 34140227036.63

Displaying genes 3021 – 3030 of 3058 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

181 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000419S-formylmycothiolC18H30N2O13SChemical structure of S-formylmycothiolNot available
Average514.5Da
Monoisotopic514.146860208Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da

Displaying 1–10 of 181 metabolites

Health Effects

No health effects information available for this bacterium.