Lysobacter sp. Root494

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Lysobacter

Description

Lysobacter sp. Root494 is a Gram-negative, rod-shaped bacterium characterized by a single replicon. This organism is part of the genus Lysobacter, which is known for its diverse metabolic capabilities and roles in various ecological niches. The accession number for Lysobacter sp. Root494 is LMFH00000000.1, which provides a reference point for genomic and taxonomic studies. The unique traits of this bacterium suggest it may have specific adaptations that allow it to thrive in its environment, potentially influencing soil health and plant interactions. In ecological contexts, members of the Lysobacter genus are often noted for their capacity to degrade complex organic materials and contribute to nutrient cycling. Their presence in soil ecosystems can be significant, as they may promote plant growth and health through various mechanisms, including the suppression of plant pathogens. Understanding the specific characteristics and behaviors of Lysobacter sp. Root494 can provide insights into its potential applications in agriculture and environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusLysobacter
SpeciesLysobacter sp. Root494
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Lysobacter sp. Root494
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysobacter sp. Root494 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

596794 bp

Thymine Count

598383 bp

Guanine Count

1128070 bp

Cytosine Count

1118026 bp

Genome Length

3441323 bp

Protein-coding Genes

3007 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cell division protein ftszASD14_13510P47204Negative3003887 - 300511642651.2
cell division protein ftsaASD14_13515P47203Negative3005225 - 300647544475.7
cell division protein ftsqASD14_13520Q8PCJ7Negative3006472 - 300721527198.1
d-alanine--d-alanine ligaseASD14_13525Q8PPA6Negative3007212 - 300818934796.7
udp-n-acetylmuramate--alanine ligaseASD14_13530Q8PPA7Negative3008186 - 300964051021.0
udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferaseASD14_13535Q4UQX0Negative3009637 - 301075238944.3
cell division protein ftswASD14_13540Q5GW40Negative3010749 - 301205647086.1
phospho-n-acetylmuramoyl-pentapeptide- transferaseASD14_13545Q8PPB0Negative3012056 - 301315339943.4
udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanine ligaseASD14_13550P11880Negative3013143 - 301453747841.0
udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligaseASD14_13555Q8PPB2Negative3014534 - 301600651767.0

Displaying genes 2661 – 2670 of 3058 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

181 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000419S-formylmycothiolC18H30N2O13SChemical structure of S-formylmycothiolNot available
Average514.5Da
Monoisotopic514.146860208Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da

Displaying 1–10 of 181 metabolites

Health Effects

No health effects information available for this bacterium.