Nocardia sp. Root136

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Nocardia

Description

Nocardia sp. Root136 is a notable microbial organism characterized by the presence of flagella, which suggests it possesses motility capabilities potentially advantageous for its survival and ecological interactions. The organism has a single replicon, indicating a streamlined genomic structure that can influence its replication and overall biology. The sequence data for Nocardia sp. Root136 is cataloged under the accession LMFE00000000.1, providing a reference point for further studies and comparisons within the Nocardia genus. Ecologically, members of the Nocardia genus are known for their roles in soil environments, where they contribute to the decomposition of organic matter and nutrient cycling. Their flagellated nature may enhance their ability to navigate through soil matrices, allowing them to colonize diverse niches and interact with other microorganisms. This motility can be crucial in their adaptation to fluctuating environmental conditions, enabling them to exploit available resources efficiently. In summary, Nocardia sp. Root136's flagella presence and single replicon status provide insights into its potential ecological roles, particularly in soil ecosystems where mobility and adaptability are vital for survival and nutrient acquisition.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusNocardia
SpeciesNocardia sp. Root136
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardia sp. Root136 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1203059 bp

Thymine Count

1177277 bp

Guanine Count

2423391 bp

Cytosine Count

2478989 bp

Genome Length

7282860 bp

Protein-coding Genes

6470 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rrna methyltransferaseASD42_17325Not AvailableNegative4514252 - 451524134250.0
cysteine--trna ligaseASD42_17330Not AvailableNegative4515241 - 451664451787.9
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseASD42_17335Not AvailableNegative4516777 - 451724415557.7
2-c-methyl-d-erythritol 4-phosphate cytidylyltransferaseASD42_17340Not AvailableNegative4517241 - 451796024343.3
card family transcriptional regulatorASD42_17345Not AvailableNegative4518013 - 451850117862.4
hypothetical proteinASD42_17350Not AvailablePositive4518898 - 451955421931.6
dna repair protein radaASD42_17355Not AvailablePositive4519731 - 452103545485.1
hypothetical proteinASD42_17360Not AvailableNegative4521190 - 452187323162.0
carbonic anhydraseASD42_17365Not AvailableNegative4521956 - 452257922094.6
adenine glycosylaseASD42_17370Not AvailablePositive4522670 - 452354831694.0

Displaying genes 4051 – 4060 of 6526 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.