Nocardia sp. Root136

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Nocardia

Description

Nocardia sp. Root136 is a notable microbial organism characterized by the presence of flagella, which suggests it possesses motility capabilities potentially advantageous for its survival and ecological interactions. The organism has a single replicon, indicating a streamlined genomic structure that can influence its replication and overall biology. The sequence data for Nocardia sp. Root136 is cataloged under the accession LMFE00000000.1, providing a reference point for further studies and comparisons within the Nocardia genus. Ecologically, members of the Nocardia genus are known for their roles in soil environments, where they contribute to the decomposition of organic matter and nutrient cycling. Their flagellated nature may enhance their ability to navigate through soil matrices, allowing them to colonize diverse niches and interact with other microorganisms. This motility can be crucial in their adaptation to fluctuating environmental conditions, enabling them to exploit available resources efficiently. In summary, Nocardia sp. Root136's flagella presence and single replicon status provide insights into its potential ecological roles, particularly in soil ecosystems where mobility and adaptability are vital for survival and nutrient acquisition.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusNocardia
SpeciesNocardia sp. Root136
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardia sp. Root136 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1203059 bp

Thymine Count

1177277 bp

Guanine Count

2423391 bp

Cytosine Count

2478989 bp

Genome Length

7282860 bp

Protein-coding Genes

6470 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cell division protein ftsqASD42_30330Not AvailableNegative3088260 - 308893724002.3
udp-n-acetylmuramate--alanine ligaseASD42_30335Not AvailableNegative3088946 - 309046053041.1
udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferaseASD42_30340Not AvailableNegative3090457 - 309157237875.9
cell division protein ftswASD42_30345Not AvailableNegative3091624 - 309299748986.9
udp-n-acetylmuramoylalanine--d-glutamate ligaseASD42_30350Not AvailableNegative3093151 - 309458749733.4
phospho-n-acetylmuramoyl-pentapeptide- transferaseASD42_30355Not AvailableNegative3094638 - 309571438049.0
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseASD42_30360Not AvailableNegative3095791 - 309728450225.8
udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligaseASD42_30365Not AvailableNegative3097281 - 309887054634.5
cell division protein ftsiASD42_30370Not AvailableNegative3099076 - 310083061721.2
ribosomal rna small subunit methyltransferase hASD42_30380Not AvailableNegative3101966 - 310299737461.8

Displaying genes 2781 – 2790 of 6526 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.