Rhizobium sp. Root483D2

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. Root483D2 is characterized as a rod-shaped bacterium, which is a common morphology within the Rhizobium genus. This organism possesses flagella, indicating that it has the capability for motility, which can be advantageous in its ecological interactions, particularly in soil environments where it may need to move towards plant roots for symbiotic relationships. This strain has a single replicon, suggesting a relatively streamlined genetic organization. The accession number for Rhizobium sp. Root483D2 is LMFB00000000.1, indicating that it has been documented in genomic databases, providing a reference for researchers studying its genetic makeup and potential applications. In ecological terms, Rhizobium species are well-known for their role in forming symbiotic relationships with leguminous plants, where they fix atmospheric nitrogen in nodules on the plant roots. This process not only contributes to the nitrogen economy of the soil but also enhances plant growth and health. The motility conferred by its flagella may aid Rhizobium sp. Root483D2 in locating suitable host plants, thereby facilitating its role in nitrogen fixation and promoting sustainable agricultural practices. The specific traits of this strain reinforce its relevance in both microbiological research and agricultural applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. Root483D2
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp. Root483D2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium sp. Root483D2 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1203202 bp

Thymine Count

1211151 bp

Guanine Count

1823415 bp

Cytosine Count

1798861 bp

Genome Length

6042950 bp

Protein-coding Genes

5514 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phospho-2-dehydro-3-deoxyheptonate aldolaseASD32_05525P29976Positive5373316 - 537468950958.8
aldehyde-activating proteinASD32_05530Not AvailablePositive5374810 - 537520814439.8
hypothetical proteinASD32_05535Not AvailableNegative5375337 - 537625734796.3
hypothetical proteinASD32_05540Not AvailableNegative5376472 - 537820559991.1
hypothetical proteinASD32_05545Not AvailableNegative5378207 - 537862915251.6
hypothetical proteinASD32_05550Not AvailableNegative5378845 - 537939020512.9
cation tolerance protein cutaASD32_05555P72302Negative5379480 - 538142673441.9
nad synthetaseASD32_05560Q03638Positive5381696 - 538337561436.3
hypothetical proteinASD32_05565Q8UEU8Positive5383392 - 538422530519.3
laci family transcriptional regulatorASD32_05570Not AvailableNegative5384291 - 538531937195.7

Displaying genes 5011 – 5020 of 5637 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

348 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 348 metabolites

Health Effects

No health effects information available for this bacterium.