Variovorax sp. Root473

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. Root473 is a rod-shaped bacterium characterized by its single replicon. This organism can be identified through its unique genetic material, as indicated by its accession number LMEV00000000.1, which serves as a reference for its genomic sequence. The morphology of Variovorax sp. Root473, being rod-shaped, suggests a typical structure among many bacteria, which may influence its motility and ecological interactions. The presence of a single replicon indicates a streamlined genetic organization, which can be an advantage for replication and adaptation in various environments. Variovorax species are known for their metabolic versatility and ability to degrade a range of organic compounds. This suggests that Variovorax sp. Root473 may play a significant role in biogeochemical cycles, particularly in the degradation of pollutants or organic matter in its habitat. The ecological implications of such metabolic capabilities can be profound, as they contribute to nutrient cycling and the maintenance of soil health. Overall, the traits of Variovorax sp. Root473 highlight its potential significance in ecological systems, particularly in environments where organic matter degradation is essential for ecosystem functioning. The understanding of its genomic structure and morphological characteristics lays the groundwork for further research into its ecological roles and applications in bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. Root473
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. Root473 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

927571 bp

Thymine Count

919826 bp

Guanine Count

1948589 bp

Cytosine Count

1948768 bp

Genome Length

5749203 bp

Protein-coding Genes

5226 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-hydroxy-3-methylglutaryl coa synthaseASD34_00300Not AvailableNegative70200 - 7167553423.2
esteraseASD34_00305Not AvailableNegative71678 - 7261633463.9
3-oxoacyl-acp reductaseASD34_00310Not AvailableNegative72613 - 7334124572.6
enoyl-coa hydrataseASD34_00315Not AvailableNegative73338 - 7413527562.9
ring-hydroxylating dioxygenase subunit betaASD34_00320Not AvailableNegative74229 - 7471418714.1
ring-hydroxylating oxygenase subunit alphaASD34_00325Not AvailableNegative74717 - 7600648314.2
(2fe-2s)-binding proteinASD34_00330Not AvailablePositive76183 - 7650311437.8
abc transporter substrate-binding proteinASD34_00335Not AvailablePositive76803 - 7777134144.6
3-oxosteroid 1-dehydrogenaseASD34_00340Not AvailablePositive77835 - 7955361309.5
nipsnap family containing proteinASD34_00345Not AvailablePositive79580 - 7992112814.6

Displaying genes 61 – 70 of 5274 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.