Variovorax sp. Root473

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. Root473 is a rod-shaped bacterium characterized by its single replicon. This organism can be identified through its unique genetic material, as indicated by its accession number LMEV00000000.1, which serves as a reference for its genomic sequence. The morphology of Variovorax sp. Root473, being rod-shaped, suggests a typical structure among many bacteria, which may influence its motility and ecological interactions. The presence of a single replicon indicates a streamlined genetic organization, which can be an advantage for replication and adaptation in various environments. Variovorax species are known for their metabolic versatility and ability to degrade a range of organic compounds. This suggests that Variovorax sp. Root473 may play a significant role in biogeochemical cycles, particularly in the degradation of pollutants or organic matter in its habitat. The ecological implications of such metabolic capabilities can be profound, as they contribute to nutrient cycling and the maintenance of soil health. Overall, the traits of Variovorax sp. Root473 highlight its potential significance in ecological systems, particularly in environments where organic matter degradation is essential for ecosystem functioning. The understanding of its genomic structure and morphological characteristics lays the groundwork for further research into its ecological roles and applications in bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. Root473
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. Root473 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

927571 bp

Thymine Count

919826 bp

Guanine Count

1948589 bp

Cytosine Count

1948768 bp

Genome Length

5749203 bp

Protein-coding Genes

5226 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphoglucosamine mutaseASD34_15995Not AvailableNegative4429587 - 443092447351.7
dihydropteroate synthaseASD34_16000Not AvailableNegative4430931 - 443174328623.4
cell division protein ftshASD34_16005Not AvailableNegative4431849 - 443376569970.4
rrna methyltransferaseASD34_16010Not AvailableNegative4433931 - 443459924191.4
rna-binding proteinASD34_16015Not AvailablePositive4434633 - 443511217701.8
glycosyltransferaseASD34_16020Not AvailablePositive4435115 - 443587329133.7
hypothetical proteinASD34_16025Not AvailableNegative4435922 - 443634115147.1
transcription elongation factor greaASD34_16030Not AvailableNegative4436350 - 443682617176.3
3-deoxy-d-manno-oct-2-ulosonic acid (kdo) hydroxylaseASD34_16035Not AvailableNegative4436891 - 443776032616.9
carbamoyl phosphate synthase large subunitASD34_16040Not AvailableNegative4437773 - 4441021117650.0

Displaying genes 4081 – 4090 of 5274 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.