Variovorax sp. Root473

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. Root473 is a rod-shaped bacterium characterized by its single replicon. This organism can be identified through its unique genetic material, as indicated by its accession number LMEV00000000.1, which serves as a reference for its genomic sequence. The morphology of Variovorax sp. Root473, being rod-shaped, suggests a typical structure among many bacteria, which may influence its motility and ecological interactions. The presence of a single replicon indicates a streamlined genetic organization, which can be an advantage for replication and adaptation in various environments. Variovorax species are known for their metabolic versatility and ability to degrade a range of organic compounds. This suggests that Variovorax sp. Root473 may play a significant role in biogeochemical cycles, particularly in the degradation of pollutants or organic matter in its habitat. The ecological implications of such metabolic capabilities can be profound, as they contribute to nutrient cycling and the maintenance of soil health. Overall, the traits of Variovorax sp. Root473 highlight its potential significance in ecological systems, particularly in environments where organic matter degradation is essential for ecosystem functioning. The understanding of its genomic structure and morphological characteristics lays the groundwork for further research into its ecological roles and applications in bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. Root473
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. Root473 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

927571 bp

Thymine Count

919826 bp

Guanine Count

1948589 bp

Cytosine Count

1948768 bp

Genome Length

5749203 bp

Protein-coding Genes

5226 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
marr family transcriptional regulatorASD34_10625Not AvailablePositive3303228 - 330368316408.6
mfs transporterASD34_10630Not AvailablePositive3303813 - 330512946608.9
mate family efflux transporterASD34_10635Not AvailablePositive3305145 - 330656649093.5
short-chain dehydrogenaseASD34_10640Not AvailablePositive3306601 - 330730824023.6
hypothetical proteinASD34_10645Not AvailableNegative3307318 - 330764712639.7
hypothetical proteinASD34_10650Not AvailableNegative3307762 - 330849926663.9
2-dehydro-3-deoxy-6-phosphogalactonate aldolaseASD34_10655Not AvailableNegative3308554 - 330919521624.5
2-dehydro-3-deoxygalactonokinaseASD34_10660Not AvailableNegative3309192 - 331010032087.6
dihydroxy-acid dehydrataseASD34_10665Not AvailableNegative3310203 - 331194262996.1
gntr family transcriptional regulatorASD34_10670Not AvailablePositive3312156 - 331290527149.9

Displaying genes 3021 – 3030 of 5274 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.