Devosia sp. Root413D1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Devosiaceae

Genus

Devosia

Description

Devosia sp. Root413D1 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species is notable for possessing a single replicon, which is an important feature in understanding its genetic structure and replication mechanisms. The genomic data for this organism is available under the accession number LMEA00000000.1. As a member of the genus Devosia, this bacterium is likely to be involved in various ecological processes, particularly in soil and plant-associated environments. The Gram-negative classification suggests that Devosia sp. Root413D1 has a complex cell wall structure, which may confer advantages in terms of resistance to certain environmental stresses and interactions with other microorganisms. Ecologically, bacteria in the Devosia genus are often associated with plant roots and may play a role in nutrient cycling, particularly in the context of plant-microbe interactions. This relationship can be crucial for plant health and growth, as beneficial bacteria can enhance nutrient availability and uptake, contributing to overall ecosystem productivity. Understanding the specific traits and genomic characteristics of Devosia sp. Root413D1 can provide insights into its ecological roles and potential applications in agriculture or bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyDevosiaceae
GenusDevosia
SpeciesDevosia sp. Root413D1
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatRoot of Arabidopsis thaliana
Biotic relationshipNot Available
Host(s)Arabidopsis thaliana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Devosia sp. Root413D1 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1013293 bp

Thymine Count

1012598 bp

Guanine Count

1890167 bp

Cytosine Count

1935275 bp

Genome Length

5851492 bp

Protein-coding Genes

5472 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadh-quinone oxidoreductase chain 13ASC89_07700P29925Negative1735807 - 173732455401.9
nadh:ubiquinone oxidoreductase subunit lASC89_07705P29924Negative1737321 - 173938775099.0
nadh-quinone oxidoreductase subunit kASC89_07710B2S553Negative1739395 - 173971511119.1
nadh:ubiquinone oxidoreductase subunit jASC89_07715P50975Negative1739716 - 174032421652.5
nadh dehydrogenaseASC89_07720A6X1M5Negative1740334 - 174082218689.4
nadh:ubiquinone oxidoreductase subunit hASC89_07725Q3SRF1Negative1740822 - 174188939093.3
nadh dehydrogenaseASC89_07730P29915Negative1741929 - 174404075013.0
nadh dehydrogenaseASC89_07735P56912Negative1744046 - 174535947946.4
hypothetical proteinASC89_07740P56909Negative1745359 - 174663344694.1
nadh dehydrogenaseASC89_07745A5EK97Negative1746633 - 174782344499.9

Displaying genes 1661 – 1670 of 2436 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

152 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da

Displaying 1–10 of 152 metabolites

Health Effects

No health effects information available for this bacterium.