Pelomonas sp. Root1237

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Sphaerotilaceae

Genus

Roseateles

Description

Pelomonas sp. Root1237 is a Gram-negative bacterium characterized by its rod-shaped morphology. The organism is notable for possessing a single replicon, which is indicative of its genetic organization. The genomic data for Pelomonas sp. Root1237 can be accessed through the accession number LMDK00000000.1. The Gram-negative classification suggests that Pelomonas sp. Root1237 has a distinctive cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane. This structural feature is significant as it can influence the bacterium's interactions with its environment, including resistance to certain antibiotics and its ability to survive in various ecological niches. The presence of a single replicon may provide insights into the bacterium's evolutionary adaptations and metabolic capabilities. This trait could reflect a streamlined genome that may be advantageous in specific environments, potentially allowing for efficient resource utilization. Understanding the traits and genetic characteristics of Pelomonas sp. Root1237 is valuable for ecological studies, particularly in examining its role in nutrient cycling within its habitat. As a member of the microbiota, this bacterium may contribute to the breakdown of organic materials and the promotion of soil health, thereby supporting plant growth and ecosystem stability. Further research could elucidate its specific functions and interactions within its ecological community.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilySphaerotilaceae
GenusRoseateles
SpeciesPelomonas sp. Root1237
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pelomonas sp. Root1237 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1041788 bp

Thymine Count

1041285 bp

Guanine Count

2177032 bp

Cytosine Count

2173039 bp

Genome Length

6433402 bp

Protein-coding Genes

5553 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
merr family transcriptional regulatorASC91_00155Not AvailablePositive35580 - 3601716408.9
ketosteroid isomeraseASC91_00160Not AvailablePositive36023 - 3642714961.7
disulfide isomeraseASC91_00165Not AvailablePositive36536 - 3810156027.8
hypothetical proteinASC91_00170Not AvailableNegative38105 - 383087553.04
hypothetical proteinASC91_00175Not AvailableNegative38569 - 3946232461.0
abc transporter substrate-binding proteinASC91_00180Q9I402Positive39562 - 4044631649.1
hypothetical proteinASC91_00185O58403Positive40593 - 4129124177.7
hypothetical proteinASC91_00190Not AvailablePositive41416 - 4287652425.5
hypothetical proteinASC91_00195P46903Positive42966 - 4366724783.0
sodium abc transporter permeaseASC91_00200P46904Positive43664 - 4482741439.4

Displaying genes 31 – 40 of 5635 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

326 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 326 metabolites

Health Effects

No health effects information available for this bacterium.