Rhizobium sp. Root1220

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. Root1220 is a rod-shaped bacterium characterized by the presence of flagella, which enables motility. This organism has a single replicon, suggesting a streamlined genomic structure that may contribute to its adaptability and efficiency in various environmental conditions. The strain is cataloged under the accession number LMDG00000000.1, which indicates its availability in microbial databases for further research and characterization. As a member of the Rhizobium genus, Root1220 is likely to engage in symbiotic relationships with leguminous plants, facilitating nitrogen fixation. This process is critical for enhancing soil fertility and promoting sustainable agricultural practices. The bacterium's motility, aided by its flagella, may play a significant role in its ability to colonize plant roots effectively, thereby establishing beneficial associations. The ecological insight drawn from the presence of Rhizobium sp. Root1220 in the soil environment underscores the importance of microbial interactions in nutrient cycling and plant health. By forming symbiotic relationships with legumes, this bacterium not only supports plant growth but also contributes to the overall health of the ecosystem. Understanding the traits and behaviors of Rhizobium sp. Root1220 can provide valuable information for improving agricultural productivity and sustainability through the use of natural microbial solutions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. Root1220
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp. Root1220
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium sp. Root1220


Gene Summary

Adenine Count

1162031 bp

Thymine Count

1158741 bp

Guanine Count

1707579 bp

Cytosine Count

1721127 bp

Genome Length

5749658 bp

Protein-coding Genes

5287 genes

Non-Coding Genes

90 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-binding proteinASC90_03280Q2YRJ0Positive1952394 - 195323030193.4
hypothetical proteinASC90_03285Not AvailablePositive1953499 - 195405619567.8
30s ribosomal protein s2ASC90_03290B9JEX0Positive1954276 - 195504328219.9
elongation factor tsASC90_03295B9JEX1Positive1955288 - 195621432276.8
uridylate kinaseASC90_03300Q2K8Y5Positive1956308 - 195703025029.4
ribosome-recycling factorASC90_03305Q1MH51Positive1957082 - 195764220710.9
udp pyrophosphate synthaseASC90_03310Q8UFL9Positive1957674 - 195841427708.1
phosphatidate cytidylyltransferaseASC90_03315Q2YRP9Positive1958414 - 195924728845.1
rip metalloprotease rsepASC90_03320Q8UFL7Positive1959276 - 196040940317.6
outer membrane protein assembly factor bamaASC90_03325C6DAJ1Positive1960605 - 196295984812.7

Displaying genes 1871 – 1880 of 5377 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

320 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da

Displaying 1–10 of 320 metabolites

Health Effects

No health effects information available for this bacterium.