Caulobacter sp. Root343

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Caulobacterales

Family

Caulobacteraceae

Genus

Caulobacter

Description

Caulobacter sp. Root343 is a Gram-negative, rod-shaped bacterium characterized by the presence of flagella, which enables motility. This organism has a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptability. The accession number for Caulobacter sp. Root343 is LMDF00000000.1, which provides a reference for researchers interested in genomic and phenotypic studies of this bacterial strain. In the ecological context, members of the Caulobacter genus are known for their role in aquatic environments, where they contribute to nutrient cycling and play a part in the microbial community dynamics. The motility conferred by flagella may allow Caulobacter sp. Root343 to navigate its environment effectively, potentially influencing its interactions with other microorganisms and its ability to colonize surfaces. This adaptability highlights the ecological significance of Caulobacter sp. Root343 within its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderCaulobacterales
FamilyCaulobacteraceae
GenusCaulobacter
SpeciesCaulobacter sp. Root343
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Caulobacter sp. Root343
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Caulobacter sp. Root343 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

857123 bp

Thymine Count

853629 bp

Guanine Count

1823492 bp

Cytosine Count

1823278 bp

Genome Length

5357871 bp

Protein-coding Genes

4719 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cell wall biosynthesis glycosyltransferaseASC70_11305Not AvailablePositive2873394 - 287385815933.6
lytic transglycosylaseASC70_11310Not AvailableNegative2873868 - 287547257055.0
dna polymeraseASC70_11315Not AvailableNegative2875530 - 287635129049.1
electron transfer flavoprotein-ubiquinone oxidoreductaseASC70_11320Q9HZP5Positive2876503 - 287817660338.1
hypothetical proteinASC70_11325P42810Positive2878261 - 287999161427.6
4-diphosphocytidyl-2c-methyl-d-erythritol kinaseASC70_11330B8H510Positive2880033 - 288090530169.2
peptidylprolyl isomeraseASC70_11335Not AvailablePositive2880915 - 288155021963.8
hypothetical proteinASC70_11340P96581Negative2881547 - 288235028615.9
ammonia channel proteinASC70_11345P69680Negative2882473 - 288399952182.9
transcriptional regulatorASC70_11350O54053Negative2884026 - 288436411789.3

Displaying genes 2531 – 2540 of 4783 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

361 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 361 metabolites

Health Effects

No health effects information available for this bacterium.