Caulobacter sp. Root342

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Caulobacterales

Family

Caulobacteraceae

Genus

Caulobacter

Description

Caulobacter sp. Root342 is a Gram-negative, rod-shaped bacterium characterized by the presence of flagella. This motility feature is significant as it allows the organism to navigate its aquatic environment effectively. The bacterium possesses a single replicon, indicating a streamlined genomic structure that is typical for members of the Caulobacter genus. The accession number for Caulobacter sp. Root342 is LMDD00000000.1, which provides a reference for its genetic information in biological databases. This accession can be used for further studies and comparisons with other microorganisms, aiding in the understanding of its genetic and functional characteristics. Ecologically, members of the Caulobacter genus are often found in freshwater environments where they play essential roles in nutrient cycling and serve as a food source for protozoa and other microorganisms. The flagellated form of Caulobacter sp. Root342 may enhance its ability to colonize surfaces and access nutrients, thereby contributing to its ecological niche. Understanding this organism's traits can provide insights into its role in microbial communities and its potential applications in biotechnology or environmental sciences.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderCaulobacterales
FamilyCaulobacteraceae
GenusCaulobacter
SpeciesCaulobacter sp. Root342
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Caulobacter sp. Root342
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Caulobacter sp. Root342 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

837613 bp

Thymine Count

839555 bp

Guanine Count

1791956 bp

Cytosine Count

1785303 bp

Genome Length

5258820 bp

Protein-coding Genes

4592 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter atp-binding proteinASC62_17855P23886Negative4015204 - 401678153444.8
abc transporter atp-binding proteinASC62_17860P29018Negative4016778 - 401840956190.9
cytochrome d terminal oxidase subunit 1ASC62_17865Q09049Positive4018533 - 402009857137.3
cytochrome d ubiquinol oxidase subunit 2ASC62_17870P0ABK4Positive4020111 - 402126241501.1
cytochrome bd biosynthesis proteinASC62_17875Not AvailablePositive4021277 - 40213964383.12
chemotaxis protein chewASC62_17880Q52881Positive4021539 - 402199116661.4
hypothetical proteinASC62_17885Not AvailableNegative4022101 - 402257717448.3
gtp-binding proteinASC62_17890Q9ZG89Negative4022808 - 402340721866.8
preprotein translocase yidcASC62_17895Q9AA40Negative4023488 - 402534768737.7
ribonuclease p protein componentASC62_17900Q9AA39Negative4025355 - 402581616735.2

Displaying genes 3551 – 3560 of 4654 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

361 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 361 metabolites

Health Effects

No health effects information available for this bacterium.