Rhizobium sp. Root1204

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. Root1204 is a rod-shaped bacterium that exhibits the presence of flagella, which facilitates its motility. This species is characterized by having a single replicon, indicating a simplified genomic structure that may contribute to its adaptability and efficiency in various environmental conditions. The organism is cataloged under the accession number LMCZ00000000.1, which provides a reference for genetic and genomic studies. Rhizobium species, including Root1204, are well-known for their role in nitrogen fixation, forming symbiotic relationships with leguminous plants. This symbiosis is critical for enhancing soil fertility and promoting plant growth by converting atmospheric nitrogen into a form that plants can utilize. The presence of flagella suggests that Rhizobium sp. Root1204 may have enhanced mobility, which could be beneficial in seeking out root exudates from host plants or navigating through soil microenvironments. This motility may play a significant role in establishing beneficial associations with plants, further emphasizing the ecological importance of this bacterium. In summary, Rhizobium sp. Root1204, with its rod shape, flagella, and single replicon, exemplifies the adaptations of nitrogen-fixing bacteria that facilitate their ecological roles in promoting plant health and contributing to nitrogen cycling in ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. Root1204
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp. Root1204
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium sp. Root1204


Gene Summary

Adenine Count

1346924 bp

Thymine Count

1336102 bp

Guanine Count

1943643 bp

Cytosine Count

1956922 bp

Genome Length

6583769 bp

Protein-coding Genes

6050 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
flagellar motor switch protein flimASC96_00085O54246Positive11864 - 1281134155.1
flagellar motor switch protein flinASC96_00090O54245Positive12872 - 1349521414.8
flagellar motor switch protein fligASC96_00095O54244Positive13524 - 1455537484.4
flagellar biosynthetic protein flhbASC96_00100O54243Positive14763 - 1583940295.5
hypothetical proteinASC96_00105O54242Positive15845 - 1628515801.6
luxr family transcriptional regulatorASC96_00110Not AvailableNegative16323 - 1701524840.1
luxr family transcriptional regulatorASC96_00115P0A3J5Negative17079 - 1781927559.2
flagellar m-ring protein flifASC96_00120O54239Negative18745 - 2043359474.8
hypothetical proteinASC96_00125Not AvailablePositive20632 - 2094011128.3
hypothetical proteinASC96_00130A9CH00Negative21071 - 2275958963.8

Displaying genes 71 – 80 of 6134 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

335 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 335 metabolites

Health Effects

No health effects information available for this bacterium.