Massilia sp. Root335

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Massilia

Description

Massilia sp. Root335 is a Gram-negative bacterium characterized by its rod-shaped morphology. It possesses a single replicon, suggesting a streamlined genetic organization typical of many bacteria in its phylogenetic group. The genetic sequence for Massilia sp. Root335 is accessible under the accession number LMCY00000000.1, which allows for further examination and study of its genomic features. Massilia species are known to inhabit a range of environments, including soil and plant-associated niches. The ecological role of Massilia sp. Root335 may involve interactions with plant roots, potentially influencing plant health or nutrient uptake. Although specific interactions or functions have not been detailed in the provided traits, the presence of this bacterium in root-associated environments suggests a possible role in promoting plant growth or health through various mechanisms, such as nutrient cycling or disease suppression. The characteristics of Massilia sp. Root335 underscore its potential significance in ecological systems, particularly in the context of plant-microbe interactions. Understanding the specific roles of such bacteria can provide insights into their contributions to soil health, plant growth, and overall ecosystem functioning. Further research into this species may reveal additional traits and functions that contribute to its ecological importance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusMassilia
SpeciesMassilia sp. Root335
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Massilia sp. Root335
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Massilia sp. Root335 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1197100 bp

Thymine Count

1194930 bp

Guanine Count

2350708 bp

Cytosine Count

2354608 bp

Genome Length

7110836 bp

Protein-coding Genes

5603 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
flagellar biosynthesis protein flghASC93_17775Q3SIE4Negative3700119 - 370074821978.3
flagellar basal-body rod protein flggASC93_17780P0A1J4Negative3700823 - 370160527518.3
flagellar biosynthesis protein flgfASC93_17785P75938Negative3701667 - 370240725641.4
flagellar hook-basal body proteinASC93_17790Not AvailableNegative3702586 - 370411251784.0
flagellar biosynthesis protein flgdASC93_17795P75936Negative3704155 - 370486224214.7
flagellar basal-body rod protein flgcASC93_17800P0ABX4Negative3704901 - 370529914139.8
flagellar biosynthesis protein flgbASC93_17805P16437Negative3705302 - 370573015206.8
flagellar biosynthesis protein flgaASC93_17810Not AvailablePositive3705901 - 370659923644.6
flagellar biosynthesis anti-sigma factor flgmASC93_17815Not AvailablePositive3706759 - 370706110422.2
hypothetical proteinASC93_17820Not AvailablePositive3707069 - 370753916386.6

Displaying genes 2931 – 2940 of 5660 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

313 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 313 metabolites

Health Effects

No health effects information available for this bacterium.