Rhizobium sp. Root1203

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. Root1203 is a rod-shaped bacterium characterized by the presence of flagella, which enables motility. This organism possesses a single replicon, indicating a streamlined genetic organization that may facilitate efficient cellular processes. The available accession number for Rhizobium sp. Root1203 is LMCW00000000.1, which provides a reference for researchers seeking to explore its genomic and biological features further. In the context of its ecological role, Rhizobium species are well-known for their symbiotic relationships with leguminous plants, where they contribute to nitrogen fixation. This process enriches the soil with nitrogen compounds, promoting plant growth and enhancing soil fertility. The motility conferred by flagella may aid Rhizobium sp. Root1203 in navigating the rhizosphere, facilitating effective colonization of plant roots and establishing symbiotic interactions. Understanding the specific traits of Rhizobium sp. Root1203 can provide insights into its potential applications in sustainable agriculture, particularly in improving crop yield and soil health in nitrogen-poor environments. The ability to form symbiotic relationships underscores the ecological significance of this bacterium, not only in enhancing plant growth but also in contributing to the overall health of ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. Root1203
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp. Root1203
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium sp. Root1203 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1336722 bp

Thymine Count

1340975 bp

Guanine Count

2015696 bp

Cytosine Count

2011768 bp

Genome Length

6705461 bp

Protein-coding Genes

6141 genes

Non-Coding Genes

160 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
laci family transcriptional regulatorASC97_22480Q56194Positive1739265 - 174029636867.1
fad-dependent oxidoreductaseASC97_22485Not AvailablePositive1740325 - 174192659230.9
sugar abc transporter substrate-binding proteinASC97_22490Not AvailablePositive1741967 - 174323845214.9
sugar abc transporter permeaseASC97_22495O32155Positive1743250 - 174418234387.8
sugar abc transporter atp-binding proteinASC97_22500O31520Positive1744172 - 174501431419.2
sugar abc transporter atp-binding proteinASC97_22505P55604Positive1745031 - 174608337865.1
hypothetical proteinASC97_22510Not AvailablePositive1746092 - 174678424673.7
hypothetical proteinASC97_22515Not AvailableNegative1747041 - 17472537793.41
hypothetical proteinASC97_22525Not AvailablePositive1748656 - 17488688066.75
hypothetical proteinASC97_22530Not AvailableNegative1749191 - 174949311048.5

Displaying genes 1841 – 1850 of 6301 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

350 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000198tetracenomycin CC23H20O11Chemical structure of tetracenomycin CNot available
Average472.402Da
Monoisotopic472.100561464Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da

Displaying 1–10 of 350 metabolites

Health Effects

No health effects information available for this bacterium.