Bradyrhizobium retamae strain Ro19

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Bradyrhizobium

Description

Bradyrhizobium retamae strain Ro19 is a rod-shaped bacterium characterized by the presence of flagella, which aids in motility. This species is notable for having a single replicon, indicating a streamlined genomic organization. The strain is cataloged under the accession number LLYA00000000.1, which serves as a reference for its genetic information. As a member of the Bradyrhizobium genus, B. retamae strain Ro19 is likely involved in symbiotic nitrogen fixation, a crucial process for enhancing soil fertility and supporting plant growth. This capability is particularly important in ecosystems where nitrogen availability is limited. The relationship between Bradyrhizobium species and leguminous plants is essential for sustainable agricultural practices, allowing for reduced reliance on chemical fertilizers. The presence of flagella indicates that B. retamae strain Ro19 possesses the ability to move actively within its environment, which may enhance its capacity to colonize host plants and establish symbiosis. This motility could play a significant role in the ecological interactions between the bacterium and its plant partners, ultimately contributing to nutrient cycling and ecosystem health. Understanding the traits of B. retamae strain Ro19 provides insight into its potential applications in sustainable agriculture and environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium retamae
Strainstrain Ro19

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bradyrhizobium retamae strain Ro19 contig_99, whole genome shotgun

Gene Summary

Adenine Count

1616242 bp

Thymine Count

1612252 bp

Guanine Count

2616561 bp

Cytosine Count

2621170 bp

Genome Length

8466225 bp

Protein-coding Genes

7431 genes

Non-Coding Genes

106 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinCQ13_15185Not AvailableNegative880420 - 88128632198.6
hypothetical proteinCQ13_15190Not AvailablePositive881401 - 88177513396.0
hypothetical proteinCQ13_15195A0A172J1S0Positive881867 - 88315347626.2
phenylacetic acid degradation proteinCQ13_15200Not AvailableNegative883122 - 88357415680.1
a/g-specific adenine glycosylaseCQ13_15205P17802Negative883650 - 88475040036.7
hypothetical proteinCQ13_15210Not AvailablePositive884924 - 88540317302.8
protein-disulfide isomeraseCQ13_15215Not AvailablePositive885521 - 88617723995.2
chromosome segregation protein smcCQ13_15220Q6N1B7Positive886404 - 889868126529.0
sam-dependent methyltransferaseCQ13_15225Not AvailablePositive890031 - 89100534738.4
hypothetical proteinCQ13_15230A8AVK0Positive891270 - 89183020342.3

Displaying genes 851 – 860 of 7537 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

465 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 465 metabolites

Health Effects

No health effects information available for this bacterium.