Bradyrhizobium valentinum strain LmjM3

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Bradyrhizobium

Description

Bradyrhizobium valentinum strain LmjM3 is characterized as a rod-shaped bacterium, which is typical for many members of the Bradyrhizobium genus. This strain possesses flagella, indicating that it is motile and can navigate its environment, which may be advantageous for colonizing plant roots or interacting with soil ecosystems. The strain has a single replicon, a feature that can influence its genetic stability and replication processes. The accession number for this strain is LLXX00000000.1, which provides a reference for further research and genomic studies. Ecologically, members of the Bradyrhizobium genus are known for their symbiotic relationships with leguminous plants, where they form root nodules and facilitate nitrogen fixation. This mutualism is crucial for enhancing soil fertility and supporting plant growth, particularly in nitrogen-poor soils. The motility of Bradyrhizobium valentinum strain LmjM3 may play a significant role in its ability to locate and colonize plant roots, thus contributing to its effectiveness in establishing symbiotic relationships and enhancing the nitrogen content in ecosystems where it is present.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium valentinum
Strainstrain LmjM3

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bradyrhizobium valentinum strain LmjM3 contig_99, whole genome

Gene Summary

Adenine Count

1682399 bp

Thymine Count

1678389 bp

Guanine Count

2729547 bp

Cytosine Count

2735611 bp

Genome Length

8845258 bp

Protein-coding Genes

7760 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinCP49_25395Not AvailablePositive6353349 - 635391821486.9
hydrataseCP49_25400Not AvailablePositive6353933 - 635471828202.5
alanine racemaseCP49_25405P67082Negative6354866 - 635554323832.9
diguanylate cyclaseCP49_25410P54595Positive6355662 - 635735361283.3
leucine--trna ligaseCP49_25415Q89WQ1Positive6357486 - 636011097995.2
hypothetical proteinCP49_25420Not AvailablePositive6360097 - 636064820202.3
dna polymerase iii subunit deltaCP49_25425Not AvailablePositive6360654 - 636168236649.3
chromosome partitioning protein parbCP49_25430P0CAV8Negative6361767 - 636265432345.6
chromosome partitioning protein paraCP49_25435P0CAV7Negative6362801 - 636365230768.0
16s rrna (guanine(527)-n(7))-methyltransferase rsmgCP49_25440A4YJT3Negative6363649 - 636434124693.6

Displaying genes 5641 – 5650 of 7829 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

443 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 443 metabolites

Health Effects

No health effects information available for this bacterium.