Bradyrhizobium valentinum strain LmjM3

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Bradyrhizobium

Description

Bradyrhizobium valentinum strain LmjM3 is characterized as a rod-shaped bacterium, which is typical for many members of the Bradyrhizobium genus. This strain possesses flagella, indicating that it is motile and can navigate its environment, which may be advantageous for colonizing plant roots or interacting with soil ecosystems. The strain has a single replicon, a feature that can influence its genetic stability and replication processes. The accession number for this strain is LLXX00000000.1, which provides a reference for further research and genomic studies. Ecologically, members of the Bradyrhizobium genus are known for their symbiotic relationships with leguminous plants, where they form root nodules and facilitate nitrogen fixation. This mutualism is crucial for enhancing soil fertility and supporting plant growth, particularly in nitrogen-poor soils. The motility of Bradyrhizobium valentinum strain LmjM3 may play a significant role in its ability to locate and colonize plant roots, thus contributing to its effectiveness in establishing symbiotic relationships and enhancing the nitrogen content in ecosystems where it is present.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium valentinum
Strainstrain LmjM3

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bradyrhizobium valentinum strain LmjM3 contig_99, whole genome

Gene Summary

Adenine Count

1682399 bp

Thymine Count

1678389 bp

Guanine Count

2729547 bp

Cytosine Count

2735611 bp

Genome Length

8845258 bp

Protein-coding Genes

7760 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna polymerase iii subunit delta'CP49_07685P52024Negative2980532 - 298157237228.7
thymidylate kinaseCP49_07690Q89LM5Negative2981569 - 298225524571.4
d-alanyl-d-alanine carboxypeptidaseCP49_07695P08506Negative2982258 - 298352045030.3
epoxide hydrolaseCP49_07700Not AvailablePositive2983682 - 298462634255.0
hypothetical proteinCP49_07705Q9JSM7Negative2984694 - 298562033037.1
Trna-serNot AvailableNot AvailablePositive2986480 - 2986569Not Available
carnitine dehydrataseCP49_41600Q7CXU0Negative2988188 - 298938442896.6
organic hydroperoxide resistance proteinCP49_41605P0A0V4Negative2989560 - 298998513975.7
marr family transcriptional regulatorCP49_41610Not AvailablePositive2990145 - 299060317079.0
excinuclease abc subunit cCP49_41615Not AvailableNegative2990704 - 29909408952.8

Displaying genes 2701 – 2710 of 7829 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

443 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 443 metabolites

Health Effects

No health effects information available for this bacterium.