Stenotrophomonas panacihumi strain JCM 16536

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Stenotrophomonas

Description

Stenotrophomonas panacihumi strain JCM 16536 is a rod-shaped bacterium characterized by the presence of flagella, which enables its motility. This strain has a single replicon, indicating a streamlined genomic structure that is typical for many bacteria within the Stenotrophomonas genus. The strain is cataloged under the accession number LLXU00000000.1, which provides a unique identifier for genomic studies and comparisons. As a member of the Stenotrophomonas genus, S. panacihumi is likely to possess traits associated with environmental adaptability and resilience. Species within this genus are known for their versatility in various habitats, including soil and plant-associated environments, which suggests that S. panacihumi may play a role in ecological interactions, such as promoting plant health or contributing to nutrient cycling. The presence of flagella in S. panacihumi indicates its ability to navigate through diverse microbial communities, potentially influencing its interactions with other microorganisms and its environment. This motility may facilitate the colonization of plant roots or other substrates, allowing the bacterium to engage in symbiotic or competitive relationships. In summary, Stenotrophomonas panacihumi strain JCM 16536 exhibits key traits such as its rod shape, motility due to flagella, and a single replicon, which collectively contribute to its ecological role and adaptability in various environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusStenotrophomonas
SpeciesStenotrophomonas panacihumi
Strainstrain JCM 16536

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stenotrophomonas panacihumi strain JCM 16536 contig_99, whole

Gene Summary

Adenine Count

614144 bp

Thymine Count

608188 bp

Guanine Count

1348663 bp

Cytosine Count

1352160 bp

Genome Length

3923155 bp

Protein-coding Genes

3387 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp diphosphate synthaseARC20_16490Q8PMK9Negative3803289 - 380402627599.0
ribosome recycling factorARC20_16495Q4USQ7Negative3804060 - 380461720612.9
uridylate kinaseARC20_16500Q3BVK6Negative3804725 - 380544725667.4
diguanylate cyclaseARC20_16505Not AvailableNegative3805560 - 380705955247.3
hypothetical proteinARC20_16515Q4UQ11Negative3807906 - 380837918020.3
dna processing protein dpraARC20_16520P43862Negative3808423 - 380957439360.4
peptidoglycan-binding protein lysmARC20_16525Not AvailableNegative3809646 - 381077041109.0
peptide deformylaseARC20_16530Q8P4F9Positive3810902 - 381141418990.0
methionyl-trna formyltransferaseARC20_16535Q8PG21Positive3811494 - 381242032888.8
16s rrna methyltransferaseARC20_16540Q8P4G1Positive3812417 - 381372746865.3

Displaying genes 3361 – 3370 of 3458 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

226 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da

Displaying 1–10 of 226 metabolites

Health Effects

No health effects information available for this bacterium.