Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1467019 bp
Thymine Count
1458316 bp
Guanine Count
3279006 bp
Cytosine Count
3286290 bp
Genome Length
9490631 bp
Protein-coding Genes
8333 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | APR48_43445 | Not Available | Positive | 9388813 - 9390711 | 69573.5 |
| amidase | APR48_43455 | Not Available | Negative | 9391526 - 9392888 | 48715.4 |
| abc transporter substrate-binding protein | APR48_43460 | Not Available | Negative | 9392893 - 9394386 | 54104.0 |
| mechanosensitive ion channel protein | APR48_43470 | Not Available | Negative | 9394900 - 9396180 | 46273.1 |
| deacetylase | APR48_43475 | Not Available | Negative | 9396256 - 9397209 | 35213.8 |
| arabinose 5-phosphate isomerase | APR48_43485 | Not Available | Positive | 9397808 - 9398764 | 33090.4 |
| 3-deoxy-d-manno-octulosonate 8-phosphate phosphatase | APR48_43490 | Not Available | Positive | 9398764 - 9399312 | 19897.9 |
| lps export abc transporter periplasmic protein lptc | APR48_43495 | Not Available | Positive | 9399309 - 9399956 | 23653.2 |
| short-chain dehydrogenase | APR48_43500 | Not Available | Positive | 9399967 - 9400755 | 27766.7 |
| type ii secretion system protein gspd | APR48_43505 | Not Available | Negative | 9400890 - 9403220 | 81321.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
