Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1467019 bp
Thymine Count
1458316 bp
Guanine Count
3279006 bp
Cytosine Count
3286290 bp
Genome Length
9490631 bp
Protein-coding Genes
8333 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase subunit sigma-70 | APR48_40780 | Not Available | Positive | 8795153 - 8795665 | 19481.5 |
| hypothetical protein | APR48_40785 | Not Available | Positive | 8795756 - 8796751 | 35267.1 |
| fad-dependent oxidoreductase | APR48_40800 | Not Available | Positive | 8800315 - 8801496 | 41739.9 |
| spermidine/putrescine abc transporter substrate-binding protein | APR48_40805 | Not Available | Positive | 8801561 - 8802625 | 38195.2 |
| mfs transporter | APR48_40810 | Not Available | Negative | 8802649 - 8803851 | 41846.3 |
| transcriptional regulator | APR48_40815 | Not Available | Positive | 8803942 - 8804628 | 24924.2 |
| choline dehydrogenase | APR48_40820 | Not Available | Negative | 8804636 - 8806270 | 59886.0 |
| hypothetical protein | APR48_40825 | Not Available | Negative | 8806300 - 8811924 | 202379.0 |
| lysr family transcriptional regulator | APR48_40830 | Not Available | Positive | 8812222 - 8813130 | 32424.2 |
| hypothetical protein | APR48_40835 | Not Available | Positive | 8813699 - 8815621 | 70988.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
