Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1467019 bp
Thymine Count
1458316 bp
Guanine Count
3279006 bp
Cytosine Count
3286290 bp
Genome Length
9490631 bp
Protein-coding Genes
8333 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ligand-gated channel protein | APR48_28970 | Not Available | Positive | 6221776 - 6223825 | 75320.4 |
| luxr family transcriptional regulator | APR48_28975 | Not Available | Negative | 6223838 - 6224440 | 22178.9 |
| succinyl-coa--3-ketoacid-coa transferase | APR48_28980 | Not Available | Positive | 6224536 - 6225336 | 27947.7 |
| succinyl-coa--3-ketoacid-coa transferase | APR48_28985 | Not Available | Positive | 6225338 - 6225976 | 22488.6 |
| carnitine dehydratase | APR48_28990 | Not Available | Positive | 6226054 - 6227439 | 48318.7 |
| aspartate aminotransferase | APR48_28995 | Not Available | Negative | 6227436 - 6228602 | 41754.5 |
| hypothetical protein | APR48_29000 | Not Available | Negative | 6228658 - 6229839 | 42544.1 |
| laci family transcriptional regulator | APR48_29005 | Not Available | Negative | 6229853 - 6230836 | 34089.5 |
| cysteine desulfurase | APR48_29010 | Not Available | Negative | 6230863 - 6232110 | 44524.0 |
| dihydrodipicolinate synthetase | APR48_29015 | Not Available | Negative | 6232091 - 6233038 | 33899.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
