Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1467019 bp
Thymine Count
1458316 bp
Guanine Count
3279006 bp
Cytosine Count
3286290 bp
Genome Length
9490631 bp
Protein-coding Genes
8333 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-dehydro-3-deoxyglucarate aldolase | APR48_16940 | Not Available | Negative | 3607066 - 3607896 | 28923.8 |
| 2-oxo-hepta-3-ene-1,7-dioate hydratase | APR48_16945 | Not Available | Negative | 3607914 - 3608717 | 29219.9 |
| 5-carboxymethyl-2-hydroxymuconate isomerase | APR48_16950 | Not Available | Negative | 3608736 - 3609143 | 14955.8 |
| extradiol ring-cleavage dioxygenase | APR48_16955 | Not Available | Negative | 3609157 - 3609984 | 30191.0 |
| aromatic ring-opening dioxygenase liga | APR48_16960 | Not Available | Negative | 3609981 - 3610316 | 12254.7 |
| laci family transcriptional regulator | APR48_16965 | Not Available | Negative | 3610319 - 3611287 | 33740.0 |
| 2-hydroxymuconic semialdehyde dehydrogenase | APR48_16970 | Not Available | Negative | 3611290 - 3612756 | 52390.7 |
| abc transporter substrate-binding protein | APR48_16975 | Not Available | Negative | 3612770 - 3613753 | 34290.6 |
| 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase | APR48_16980 | Not Available | Negative | 3613830 - 3614582 | 27764.2 |
| fumarylacetoacetate hydrolase | APR48_16985 | Not Available | Negative | 3614579 - 3615235 | 22928.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
