Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1467019 bp
Thymine Count
1458316 bp
Guanine Count
3279006 bp
Cytosine Count
3286290 bp
Genome Length
9490631 bp
Protein-coding Genes
8333 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| branched-chain amino acid abc transporter permease | APR48_14940 | Not Available | Positive | 3164528 - 3165865 | 45390.0 |
| peptidase m20 | APR48_14945 | Not Available | Positive | 3165886 - 3167055 | 41555.4 |
| serine dehydratase | APR48_14950 | Not Available | Positive | 3167060 - 3168439 | 48026.0 |
| biphenyl 2,3-dioxygenase | APR48_14955 | Not Available | Negative | 3168457 - 3169056 | 21928.2 |
| 5-carboxymethyl-2-hydroxymuconate isomerase | APR48_14960 | Not Available | Negative | 3169053 - 3169928 | 31701.2 |
| lysr family transcriptional regulator | APR48_14965 | Not Available | Positive | 3170034 - 3170951 | 33974.3 |
| 2-methylisocitrate lyase | APR48_14970 | Not Available | Positive | 3171012 - 3171851 | 29010.4 |
| uracil-dna glycosylase | APR48_14975 | Not Available | Positive | 3171857 - 3172444 | 21918.7 |
| translation initiation inhibitor | APR48_14980 | Not Available | Positive | 3172529 - 3172930 | 14477.3 |
| hypothetical protein | APR48_14985 | Not Available | Negative | 3172938 - 3174647 | 61608.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
