Variovorax paradoxus strain H112

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax paradoxus strain H112 is a Gram-negative, aerobic bacterium characterized by its rod shape. This strain was isolated from mine spoil and soil habitats, indicating its adaptability to environments that may be disturbed or contaminated. The strain possesses a single replicon, which is distinctive for its genomic structure, and is cataloged under the accession number LKTZ00000000.1. The presence of only one replicon may influence its genomic stability and adaptability in various ecological niches. The ecological significance of Variovorax paradoxus strain H112 lies in its potential role in bioremediation processes. Given its habitat in mine spoil, this organism may contribute to the degradation of pollutants and the restoration of soil health in contaminated sites. Its aerobic nature suggests that it plays a role in aerobic degradation pathways, which are crucial for the breakdown of organic compounds in oxygen-rich environments. This trait not only highlights its importance in biogeochemical cycles but also underscores its possible use in environmental biotechnology applications aimed at mitigating the effects of mining activities on soil ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax paradoxus
Strainstrain H112

Profile

Physiology
Gram staining propertiesNegative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatmine spoil; soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax paradoxus strain H112 H112_contig000341, whole genome

Gene Summary

Adenine Count

1467019 bp

Thymine Count

1458316 bp

Guanine Count

3279006 bp

Cytosine Count

3286290 bp

Genome Length

9490631 bp

Protein-coding Genes

8333 genes

Non-Coding Genes

155 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
branched-chain amino acid abc transporter permeaseAPR48_14940Not AvailablePositive3164528 - 316586545390.0
peptidase m20APR48_14945Not AvailablePositive3165886 - 316705541555.4
serine dehydrataseAPR48_14950Not AvailablePositive3167060 - 316843948026.0
biphenyl 2,3-dioxygenaseAPR48_14955Not AvailableNegative3168457 - 316905621928.2
5-carboxymethyl-2-hydroxymuconate isomeraseAPR48_14960Not AvailableNegative3169053 - 316992831701.2
lysr family transcriptional regulatorAPR48_14965Not AvailablePositive3170034 - 317095133974.3
2-methylisocitrate lyaseAPR48_14970Not AvailablePositive3171012 - 317185129010.4
uracil-dna glycosylaseAPR48_14975Not AvailablePositive3171857 - 317244421918.7
translation initiation inhibitorAPR48_14980Not AvailablePositive3172529 - 317293014477.3
hypothetical proteinAPR48_14985Not AvailableNegative3172938 - 317464761608.1

Displaying genes 2981 – 2990 of 8488 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.