Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1467019 bp
Thymine Count
1458316 bp
Guanine Count
3279006 bp
Cytosine Count
3286290 bp
Genome Length
9490631 bp
Protein-coding Genes
8333 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinyldiaminopimelate transaminase | APR48_11865 | Not Available | Positive | 2532209 - 2533435 | 44373.9 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | APR48_11870 | Not Available | Positive | 2533485 - 2534318 | 29591.3 |
| type iv pili twitching motility protein pilt | APR48_11875 | Not Available | Positive | 2534420 - 2535568 | 42079.9 |
| succinyl-diaminopimelate desuccinylase | APR48_11880 | Not Available | Positive | 2535583 - 2536761 | 41636.5 |
| protein-(glutamine-n5) methyltransferase, ribosomal protein l3-specific | APR48_11885 | Not Available | Positive | 2536758 - 2537630 | 31044.9 |
| abc transporter | APR48_11890 | Not Available | Positive | 2537791 - 2539770 | 72032.1 |
| hypothetical protein | APR48_11895 | Not Available | Positive | 2539877 - 2540380 | 17679.9 |
| xre family transcriptional regulator | APR48_11905 | Not Available | Positive | 2541088 - 2541840 | 27756.2 |
| hypothetical protein | APR48_11910 | Not Available | Positive | 2542105 - 2542632 | 18484.0 |
| flagellar biosynthetic protein flir | APR48_11915 | Not Available | Negative | 2542634 - 2543404 | 27356.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
