Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1467019 bp
Thymine Count
1458316 bp
Guanine Count
3279006 bp
Cytosine Count
3286290 bp
Genome Length
9490631 bp
Protein-coding Genes
8333 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uridylate kinase | APR48_11460 | Not Available | Positive | 2447140 - 2447862 | 25316.9 |
| ribosome-recycling factor | APR48_11465 | Not Available | Positive | 2447875 - 2448435 | 20697.9 |
| udp diphosphate synthase | APR48_11470 | Not Available | Positive | 2448444 - 2449181 | 27092.4 |
| phosphatidate cytidylyltransferase | APR48_11475 | Not Available | Positive | 2449210 - 2450055 | 30186.2 |
| 1-deoxy-d-xylulose 5-phosphate reductoisomerase | APR48_11480 | Not Available | Positive | 2450052 - 2451242 | 41884.6 |
| rip metalloprotease rsep | APR48_11485 | Not Available | Positive | 2451283 - 2452713 | 51516.9 |
| outer membrane protein assembly factor bama | APR48_11490 | Not Available | Positive | 2452753 - 2455203 | 90707.1 |
| hypothetical protein | APR48_11495 | Not Available | Positive | 2455203 - 2455766 | 20992.8 |
| udp-3-o-(3-hydroxymyristoyl) glucosamine n-acyltransferase | APR48_11500 | Not Available | Positive | 2455781 - 2456758 | 34058.8 |
| 3-hydroxyacyl-acp dehydratase | APR48_11505 | Not Available | Positive | 2456785 - 2457237 | 16847.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
