Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1467019 bp
Thymine Count
1458316 bp
Guanine Count
3279006 bp
Cytosine Count
3286290 bp
Genome Length
9490631 bp
Protein-coding Genes
8333 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv secretion system protein virb3 | APR48_05355 | Not Available | Positive | 1135746 - 1136135 | 14672.2 |
| conjugal transfer protein | APR48_05360 | Not Available | Positive | 1136126 - 1138633 | 93171.3 |
| type iv secretion system family protein | APR48_05365 | Not Available | Positive | 1138626 - 1139360 | 27228.7 |
| conjugal transfer protein trbl | APR48_05370 | Not Available | Positive | 1139597 - 1140643 | 37083.6 |
| hypothetical protein | APR48_05375 | Not Available | Positive | 1140814 - 1141542 | 26714.6 |
| conjugal transfer protein trbg | APR48_05380 | Not Available | Positive | 1141542 - 1142381 | 30966.7 |
| conjugal transfer protein | APR48_05390 | Not Available | Negative | 1143315 - 1145255 | 71473.5 |
| peptidase | APR48_05395 | Not Available | Negative | 1145652 - 1146281 | 21729.5 |
| transposase | APR48_05400 | Not Available | Negative | 1146182 - 1146715 | 19235.8 |
| chromosome partitioning protein parb | APR48_05405 | Not Available | Negative | 1146712 - 1146972 | 9314.26 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
