Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter | APR52_43930 | Q577J5 | Positive | 9562940 - 9563932 | 35066.1 |
| aminoglycoside phosphotransferase | APR52_43935 | Q9I5U1 | Positive | 9564052 - 9565152 | 41095.2 |
| 16s rrna methyltransferase | APR52_43940 | P37995 | Positive | 9565240 - 9565974 | 25272.5 |
| aaa family atpase | APR52_43950 | Not Available | Negative | 9566854 - 9567663 | 29513.1 |
| integrase | APR52_43955 | Not Available | Negative | 9567656 - 9569167 | 56225.4 |
| alpha/beta hydrolase | APR52_43960 | Not Available | Positive | 9569285 - 9570687 | 49309.9 |
| glycerophosphodiester phosphodiesterase | APR52_43965 | Q9SD81 | Negative | 9570733 - 9571775 | 37464.6 |
| nad(p) transhydrogenase | APR52_43980 | Q2RSB3 | Positive | 9575009 - 9575338 | 11408.5 |
| nad synthetase | APR52_43985 | Not Available | Positive | 9575335 - 9576608 | 43884.5 |
| dde endonuclease | APR52_43995 | Not Available | Negative | 9577124 - 9578170 | 39803.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
