Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | APR52_37875 | Not Available | Negative | 8209967 - 8210869 | 31896.6 |
| 2,2-dialkylglycine decarboxylase | APR52_37880 | Not Available | Negative | 8210886 - 8212220 | 48262.2 |
| lysr family transcriptional regulator | APR52_37885 | Not Available | Positive | 8212396 - 8213295 | 32628.8 |
| lysr family transcriptional regulator | APR52_37890 | Not Available | Negative | 8213303 - 8214184 | 31660.7 |
| peptidase m20 | APR52_37895 | Q8GGD4 | Positive | 8214329 - 8215660 | 46539.5 |
| hypothetical protein | APR52_37900 | Not Available | Negative | 8215683 - 8216615 | 33119.6 |
| hypothetical protein | APR52_37905 | Not Available | Negative | 8216773 - 8217456 | 24773.3 |
| thiamine pyrophosphate-binding protein | APR52_37910 | Not Available | Positive | 8217556 - 8218086 | 19365.6 |
| hypothetical protein | APR52_37915 | Not Available | Positive | 8218092 - 8218727 | 22467.0 |
| glucose-methanol-choline oxidoreductase | APR52_37920 | Q8BJ64 | Positive | 8218724 - 8220355 | 58857.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
