Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1,4-alpha-glucan branching protein | APR52_37145 | Q9RX51 | Negative | 8037314 - 8039167 | 68075.0 |
| glycogen debranching protein | APR52_37150 | Not Available | Negative | 8039185 - 8041329 | 80413.3 |
| alpha-amylase | APR52_37160 | A0R6E0 | Negative | 8042279 - 8045626 | 126531.0 |
| alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase | APR52_37165 | Q8KAR6 | Negative | 8045638 - 8047707 | 77582.3 |
| glycogen branching protein | APR52_37170 | Q21WG7 | Negative | 8047821 - 8049728 | 71679.0 |
| hypothetical protein | APR52_37175 | Not Available | Negative | 8049997 - 8050353 | 12575.3 |
| luxr family transcriptional regulator | APR52_37180 | P0AED5 | Positive | 8050905 - 8051537 | 23026.8 |
| permease | APR52_37185 | P0AD32 | Negative | 8051548 - 8052309 | 25404.8 |
| hypothetical protein | APR52_37190 | Not Available | Negative | 8052363 - 8052971 | 22233.6 |
| hypothetical protein | APR52_37195 | Not Available | Negative | 8053004 - 8055166 | 76914.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
