Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-arabinitol 4-dehydrogenase | APR52_36580 | P58708 | Negative | 7912472 - 7913854 | 49470.7 |
| abc transporter atp-binding protein | APR52_36585 | Q9Z3R9 | Negative | 7913946 - 7914986 | 37258.2 |
| sugar abc transporter permease | APR52_36590 | P77716 | Negative | 7915005 - 7915841 | 30468.8 |
| sugar abc transporter permease | APR52_36595 | Q00750 | Negative | 7915853 - 7916710 | 31859.2 |
| sugar abc transporter substrate-binding protein | APR52_36600 | Q9I1E0 | Negative | 7916774 - 7918084 | 47488.9 |
| lysr family transcriptional regulator | APR52_36605 | P52661 | Negative | 7918260 - 7919159 | 32561.7 |
| abc transporter substrate-binding protein | APR52_36610 | Not Available | Positive | 7919333 - 7920328 | 34429.7 |
| 4-hydroxythreonine-4-phosphate dehydrogenase | APR52_36615 | Q9I1Q5 | Positive | 7920364 - 7921422 | 36882.3 |
| hypothetical protein | APR52_36620 | Not Available | Negative | 7921496 - 7921828 | 12332.2 |
| glucose-6-phosphate isomerase | APR52_36625 | Q21ZD5 | Negative | 7921935 - 7923500 | 56680.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
