Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| clpv1 family t6ss atpase | APR52_34935 | Q9I742 | Positive | 7535525 - 7538221 | 98063.6 |
| hypothetical protein | APR52_34945 | Not Available | Positive | 7541087 - 7543681 | 93245.5 |
| hypothetical protein | APR52_34950 | Not Available | Positive | 7543695 - 7544747 | 37270.2 |
| hypothetical protein | APR52_34955 | Not Available | Positive | 7544808 - 7545503 | 24866.0 |
| type vi secretion protein | APR52_34960 | Not Available | Positive | 7545510 - 7545905 | 13496.8 |
| hypothetical protein | APR52_34965 | Not Available | Positive | 7546034 - 7547731 | 57935.1 |
| serine/threonine protein phosphatase | APR52_34970 | Not Available | Positive | 7547796 - 7548617 | 28949.0 |
| hypothetical protein | APR52_34975 | Not Available | Negative | 7548614 - 7549210 | 22800.9 |
| hcp1 family type vi secretion system effector | APR52_34980 | Q9I747 | Negative | 7549299 - 7549781 | 16952.9 |
| evpb family type vi secretion protein | APR52_34985 | Q9I748 | Negative | 7549915 - 7551408 | 55261.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
