Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxy-tetrahydrodipicolinate synthase | APR52_33735 | A0LEA7 | Positive | 7283678 - 7284592 | 33385.5 |
| abc transporter substrate-binding protein | APR52_33740 | P21175 | Positive | 7284675 - 7285808 | 39761.9 |
| hydroxyproline-2-epimerase | APR52_33745 | Q9I476 | Positive | 7285900 - 7286844 | 32988.9 |
| d-amino acid oxidase | APR52_33750 | Q5L2C2 | Positive | 7286853 - 7287962 | 38613.6 |
| (2fe-2s)-binding protein | APR52_33755 | Not Available | Positive | 7287959 - 7288222 | 9095.23 |
| pyridine nucleotide-disulfide oxidoreductase | APR52_33760 | Q92XP4 | Positive | 7288219 - 7289511 | 44156.4 |
| gntr family transcriptional regulator | APR52_33765 | Not Available | Positive | 7289546 - 7290220 | 24456.4 |
| fatty acid desaturase | APR52_33770 | Not Available | Positive | 7290276 - 7291199 | 35195.8 |
| abc transporter permease | APR52_33775 | P42194 | Negative | 7291204 - 7292067 | 30068.9 |
| signal transduction histidine kinase | APR52_33780 | Not Available | Positive | 7292391 - 7292894 | 18682.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
