Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucose dehydrogenase | APR52_32025 | P15877 | Negative | 6945752 - 6948151 | 84834.7 |
| rok family transcriptional regulator | APR52_32030 | Q44406 | Negative | 6948327 - 6949481 | 40160.6 |
| abc transporter atp-binding protein | APR52_32035 | Q8X5Q4 | Negative | 6949505 - 6950305 | 28924.1 |
| abc transporter permease | APR52_32040 | P45045 | Negative | 6950308 - 6951498 | 41907.7 |
| sugar abc transporter substrate-binding protein | APR52_32045 | P37387 | Negative | 6951593 - 6952615 | 35839.2 |
| penicillin-binding protein | APR52_32050 | P0AD67 | Negative | 6952845 - 6954815 | 71606.5 |
| hypothetical protein | APR52_32055 | Not Available | Negative | 6954842 - 6955567 | 25839.4 |
| rod shape-determining protein mred | APR52_32060 | Not Available | Negative | 6955603 - 6956124 | 19081.1 |
| rod shape-determining protein mrec | APR52_32065 | Not Available | Negative | 6956121 - 6957128 | 35204.5 |
| rod shape-determining protein mreb | APR52_32070 | P0A9X5 | Negative | 6957213 - 6958256 | 36836.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
