Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | APR52_02400 | Not Available | Negative | 505429 - 506244 | 29556.1 |
| lysr family transcriptional regulator | APR52_02405 | Not Available | Negative | 506300 - 507214 | 33259.7 |
| naphthalene 1,2-dioxygenase | APR52_02410 | O52378 | Positive | 507343 - 508335 | 35593.2 |
| salicylate hydroxylase | APR52_02415 | O52379 | Positive | 508366 - 509625 | 48467.6 |
| salicylate hydroxylase | APR52_02420 | O52380 | Positive | 509622 - 510104 | 18250.6 |
| chorismate mutase | APR52_02425 | Not Available | Positive | 510108 - 510476 | 13817.4 |
| abc transporter substrate-binding protein | APR52_02430 | Not Available | Positive | 510473 - 511432 | 34085.4 |
| naphthalene 1,2-dioxygenase | APR52_02435 | O52381 | Positive | 511462 - 511782 | 11528.6 |
| hypothetical protein | APR52_02445 | Not Available | Positive | 512563 - 513045 | 16915.1 |
| hypothetical protein | APR52_02450 | Not Available | Negative | 513047 - 514105 | 38098.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
