Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid-a-disaccharide synthase | APR52_30755 | Q21WX7 | Positive | 6678585 - 6679703 | 40850.9 |
| ribonuclease hii | APR52_30760 | A1TN83 | Positive | 6679675 - 6680391 | 25596.3 |
| rrna methyltransferase | APR52_30765 | P74261 | Positive | 6680396 - 6681181 | 27227.9 |
| carbamoyl phosphate synthase small subunit | APR52_30770 | Q9JP87 | Positive | 6681414 - 6682607 | 42658.2 |
| carbamoyl phosphate synthase large subunit | APR52_30775 | Q8XZ83 | Positive | 6682600 - 6685848 | 117817.0 |
| 3-deoxy-d-manno-oct-2-ulosonic acid (kdo) hydroxylase | APR52_30780 | Not Available | Positive | 6685857 - 6686726 | 32527.9 |
| transcription elongation factor grea | APR52_30785 | A1WH11 | Positive | 6686791 - 6687270 | 17252.4 |
| hypothetical protein | APR52_30790 | Not Available | Positive | 6687282 - 6687701 | 15322.4 |
| glycosyltransferase | APR52_30795 | Not Available | Negative | 6687716 - 6688435 | 27933.2 |
| rna-binding protein | APR52_30800 | P71376 | Negative | 6688477 - 6688956 | 17630.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
