Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome-recycling factor | APR52_30705 | A1TN72 | Positive | 6668383 - 6668943 | 20697.9 |
| udp diphosphate synthase | APR52_30710 | Q82TZ9 | Positive | 6668952 - 6669689 | 27092.4 |
| phosphatidate cytidylyltransferase | APR52_30715 | Q59640 | Positive | 6669718 - 6670563 | 30186.2 |
| 1-deoxy-d-xylulose 5-phosphate reductoisomerase | APR52_30720 | B2UB12 | Positive | 6670560 - 6671750 | 41884.6 |
| rip metalloprotease rsep | APR52_30725 | Q8XZI4 | Positive | 6671791 - 6673221 | 51516.9 |
| outer membrane protein assembly factor bama | APR52_30730 | Not Available | Positive | 6673261 - 6675711 | 90707.1 |
| hypothetical protein | APR52_30735 | Not Available | Positive | 6675711 - 6676274 | 20992.8 |
| udp-3-o-(3-hydroxymyristoyl) glucosamine n-acyltransferase | APR52_30740 | C5CKT0 | Positive | 6676289 - 6677266 | 34058.8 |
| 3-hydroxyacyl-acp dehydratase | APR52_30745 | C5CKT1 | Positive | 6677293 - 6677745 | 16847.9 |
| udp-n-acetylglucosamine acyltransferase | APR52_30750 | C5CKT2 | Positive | 6677756 - 6678544 | 27900.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
