Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| porin | APR52_30450 | Not Available | Positive | 6618000 - 6619250 | 43672.0 |
| abc transporter permease | APR52_30455 | Not Available | Positive | 6619474 - 6620454 | 36047.7 |
| amidohydrolase | APR52_30460 | Not Available | Positive | 6620456 - 6621730 | 45000.8 |
| abc transporter substrate-binding protein | APR52_30465 | Not Available | Positive | 6621763 - 6623346 | 57987.4 |
| abc transporter permease | APR52_30470 | P0AEG3 | Positive | 6623419 - 6624330 | 32498.3 |
| methionine abc transporter atp-binding protein | APR52_30475 | Not Available | Positive | 6624349 - 6625419 | 38471.8 |
| cobalamin biosynthesis protein cobq | APR52_30485 | C5CKN7 | Positive | 6625619 - 6627040 | 50350.4 |
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | APR52_30490 | C5CKN8 | Positive | 6627037 - 6628083 | 35683.4 |
| cobalamin synthase | APR52_30495 | A1VJY2 | Positive | 6628089 - 6628883 | 26662.3 |
| phosphoglycerate kinase | APR52_30500 | Not Available | Positive | 6628886 - 6629446 | 19977.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
