Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | APR52_28315 | Not Available | Negative | 6130389 - 6133460 | 107847.0 |
| lactate dehydrogenase | APR52_28320 | Not Available | Negative | 6133776 - 6136847 | 110066.0 |
| gntr family transcriptional regulator | APR52_28325 | P54988 | Negative | 6136877 - 6137584 | 26289.0 |
| serine--glyoxylate aminotransferase | APR52_28330 | O08374 | Positive | 6137716 - 6138960 | 44416.7 |
| laci family transcriptional regulator | APR52_28335 | Not Available | Positive | 6139100 - 6140077 | 34333.4 |
| 2-keto-4-pentenoate hydratase | APR52_28340 | Not Available | Positive | 6140312 - 6141082 | 27051.1 |
| lysr family transcriptional regulator | APR52_28345 | Not Available | Negative | 6141031 - 6141993 | 34800.1 |
| arabinose transporter permease | APR52_28350 | Q8X625 | Positive | 6142097 - 6143287 | 40160.4 |
| aldo/keto reductase | APR52_28355 | Not Available | Positive | 6143315 - 6144364 | 37570.9 |
| proline dioxygenase | APR52_28360 | Q9LN20 | Negative | 6144348 - 6145244 | 32610.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
