Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| shikimate kinase | APR52_27845 | A1TKW2 | Negative | 6024954 - 6025517 | 20461.5 |
| pilus assembly protein pilp | APR52_27855 | G3XCX7 | Negative | 6027689 - 6028231 | 20141.2 |
| pilus assembly protein pilo | APR52_27860 | Not Available | Negative | 6028228 - 6028908 | 25366.4 |
| fimbrial protein | APR52_27865 | G3XD30 | Negative | 6028915 - 6029541 | 23112.9 |
| pilus assembly protein pilm | APR52_27870 | G3XD28 | Negative | 6029538 - 6030617 | 39031.8 |
| penicillin-binding protein | APR52_27875 | O87626 | Positive | 6030955 - 6033279 | 84138.6 |
| iron donor protein cyay | APR52_27880 | C5CQG3 | Negative | 6033300 - 6033632 | 12071.9 |
| hypothetical protein | APR52_27885 | Not Available | Positive | 6033645 - 6033911 | 8630.42 |
| diaminopimelate decarboxylase | APR52_27890 | Q9KVL7 | Positive | 6033908 - 6035191 | 45821.9 |
| sulfite oxidase | APR52_27895 | A1VK09 | Negative | 6035205 - 6035855 | 24506.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
