Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | APR52_01995 | Not Available | Negative | 420643 - 421170 | 18484.0 |
| xre family transcriptional regulator | APR52_02000 | Not Available | Negative | 421435 - 422187 | 27756.2 |
| hypothetical protein | APR52_02010 | Not Available | Positive | 422726 - 422962 | 8157.27 |
| hypothetical protein | APR52_02015 | Not Available | Negative | 422895 - 423398 | 17679.9 |
| abc transporter | APR52_02020 | P44808 | Negative | 423505 - 425484 | 72032.1 |
| protein-(glutamine-n5) methyltransferase, ribosomal protein l3-specific | APR52_02025 | Q7VXJ6 | Negative | 425645 - 426517 | 31044.9 |
| succinyl-diaminopimelate desuccinylase | APR52_02030 | C5CLT2 | Negative | 426514 - 427692 | 41636.5 |
| type iv pili twitching motility protein pilt | APR52_02035 | Not Available | Negative | 427707 - 428855 | 42079.9 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | APR52_02040 | C5CLT4 | Negative | 428957 - 429790 | 29591.3 |
| succinyldiaminopimelate transaminase | APR52_02045 | A1VDD3 | Negative | 429840 - 431066 | 44373.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
